Microbial agents (particularly bacteria) represent the greatest risk to public health. The traditional end-product oriented food inspection systems are inadequate for identifying and eliminating the usually symptomless animal carriers of agents causing foodborne infections and intoxications. Modern, risk-based, prevention approaches are the only effective way to reduce the prevalence of these hazards from our foods. As an additional safety-valve microbial decontamination procedures are currently being suggested and their implementation in industrial food processing has, at least in some parts of the world, met with governmental approval. The residues in foods of some non-microbial agents have more recently also caused substantial consumer disquiet. This equally applies to non-conventional foods containing GMO’s. In this publication these issues are addressed by invited expert scientists from various disciplines, many of who have key positions in EU-funded research programmes on these very topics and/or are advisers to international public health bodies.