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Part I: Basic Statistics 1. Experimental Statistics for Biological Sciences Heejung Bang and Marie Davidian 2. Nonparametric Methods in Molecular Biology Knut M. Wittkowski and Tingting Song 3. Basics of Bayesian Methods Sujit K. Ghosh 4. The Bayesian t-Test and Beyond Mithat Goenen Part II: Designs and Methods for Molecular Biology 5. Sample Size and Power Calculation for Molecular Biology Studies Sin-Ho Jung 6. Designs for Linkage Analysis and Association Studies of Complex Diseases Yuehua Cui, Gengxin Li, Shaoyu Li, and Rongling Wu 7. Introduction to Epigenomics and Epigenome-Wide Analysis Melissa J. Fazzari and John M. Greally 8. Exploration, Visualization, and Preprocessing of High Dimensional Data Zhijin Wu and Zhiqiang Wu Part III: Statistical Methods for Microarray Data 9. Introduction to the Statistical Analysis of Two-Color Microarray Data Martina Bremer, Edward Himelblau, and Andreas Madlung 10. Building Networks with Microarray Data Bradley M. Broom, Waree Rinsurongkawong, Lajos Pusztai, and Kim-Anh Do Part IV: Advanced or Specialized Methods for Molecular Biology 11. Support Vector Machines for Classification: A Statistical Portrait Yoonkyung Lee 12. An Overview of Clustering Applied to Molecular Biology Rebecca Nugent and Marina Meila 13. Hidden Markov Model and Its Applications in Motif Findings Jing Wu and Jun Xie 14. Dimension Reduction for High Dimensional Data Lexin Li 15. Introduction to the Development and Validation of Predictive Biomarker Models from High-Throughput Datasets Xutao Deng and Fabien Campagne 16. Multi-GeneExpression-Based Statistical Approaches to Predicting Patients’ Clinical Outcomes and Responses Feng Cheng, Sang-Hoon Cho, and Jae K. Lee 17. Two-Stage Testing Strategies for Genome-Wide Association Studies in Family-Based Designs Amy Murphy, Scott T. Weiss, and Christoph Lange 18. Statistical Methods for Proteomics Klaus Jung Part V: Meta-Analysis for High-Dimensional Data 19. Statistical Methods for Integrating Multiple Types of High-Throughput Data Yang Xie and Chul Ahn 20. A Bayesian Hierarchical Model for High-Dimensional Meta Analysis Fei Liu 21. Methods for Combining Multiple Genome-Wide Linkage Studies Trecia A. Kippola and Stephanie A. Santorico Part VI: Other Practical Information 22. Improved Reporting of Statistical Design and Analysis: Guidelines, Education, and Editorial Policies Madhu Mazumdar, Samprit Banerjee, and Heather L. Van Epps 23. Stata Companion Jennifer Sousa Brennan
